RECONCILIATION REPORT DIFFERENT TO PAYMENT SUMMARIES

I've just generated the payment summaries for the end of this financial year (2017-2018). I've also printed a pays report for the year, and a reconciliation statement. I have various employees whose gross amount on payment summary matches the pays report for the year, but the reconciliation statement has a different figure. Also my lump sum figures are double on the payment summary to the reconciliation report.  I need to send file off to ATO but can't do that unless this is sorted